A CRD-WEL System for Chemical-disease Relations Extraction
نویسندگان
چکیده
As one task of the BioCreative V competition, the chemical-disease relations (CDR) include two subtasks: DNER and CID. We participated in this track and designed two separate systems for each subtask. The CRD-WEL system consists of two subsystems: CRD-DNER and WEL-CID. For DNER, the CRD-DNER system is proposed, which is a combined system for disease named entity recognition based on shallow and deep models. For CID, WELCID system uses a novel word embedding model and logistic regression classifier to extract Chemical-induced Diseases from text.
منابع مشابه
CD-REST: a system for extracting chemical-induced disease relation in literature
Mining chemical-induced disease relations embedded in the vast biomedical literature could facilitate a wide range of computational biomedical applications, such as pharmacovigilance. The BioCreative V organized a Chemical Disease Relation (CDR) Track regarding chemical-induced disease relation extraction from biomedical literature in 2015. We participated in all subtasks of this challenge. In ...
متن کاملIntegrating Word Sequences and Dependency Structures for Chemical-Disease Relation Extraction
Understanding chemical-disease relations (CDR) from biomedical literature is important for biomedical research and chemical discovery. This paper uses a k-max pooling convolutional neural network (CNN) to exploit word sequences and dependency structures for CDR extraction. Furthermore, an effective weighted context method is proposed to capture semantic information of word sequences. Our system...
متن کاملUTH-CCB@BioCreative V CDR Task: Identifying Chemical-induced Disease Relations in Biomedical Text
This paper describes the system developed by the UTH-CCB team from the University of Texas Health Science Center at Houston (UTHealth), for the 2015 BioCreative V shared tasks of Track 3 on extraction of chemical disease relation (CDR). We participated in both tasks: Task A for “Disease Named Entity Recognition and Normalization (DNER)” and Task B for “Chemical-induced Diseases Relation Extract...
متن کاملA Hybrid System for Extracting Chemical-Disease Relationships from Scientific Literature
We propose a hybrid system for extracting chemical-disease relationships from Medline abstracts. At the core of our approach is a general, rule-based system that extracts causal relations from text, using a combination of trigger lists and syntactic dependencies. We augmented this system with supervised learning. We trained two binary classifiers: one extracts intra-sentential relationships bet...
متن کاملA New Method for Improving Computational Cost of Open Information Extraction Systems Using Log-Linear Model
Information extraction (IE) is a process of automatically providing a structured representation from an unstructured or semi-structured text. It is a long-standing challenge in natural language processing (NLP) which has been intensified by the increased volume of information and heterogeneity, and non-structured form of it. One of the core information extraction tasks is relation extraction wh...
متن کامل